itpseq.Sample.logo

Sample.logo(pos=None, logo_kwargs=None, ax=None, vs_ref=True, how='aax', **kwargs)

Creates a logo for the selected positions.

Parameters:

• pos (tuple) – Positions to use in the logo (see get_counts_ratio_pos)

• logo_kwargs (dict, optional) – Optional parameters to pass to logomaker.Logo.

• ax (matplotlib.axes.Axes, optional) – ax to use for plotting, otherwise create a new figure.

• kwargs (optional) – Optional parameters to pass to get_counts_ratio_pos.

See also

Sample.all_logos

Creates a logo for all positions for each replicate in the sample.

Sample.subset_logo

Creates a logo from a subset of the Differential Expression data.

Examples

>>> tcx2.logo()