Index A | C | D | F | G | H | I | K | L | M | P | R | S | V A all_logos() (itpseq.Sample method) C codon_violin() (itpseq.Sample method) copy() (itpseq.Sample method) D DE() (itpseq.DataSet method) (itpseq.Sample method) F format_sequences() (in module itpseq.parsing) G get_counts() (itpseq.Replicate method) (itpseq.Sample method) get_counts_ratio() (itpseq.Sample method) get_counts_ratio_pos() (itpseq.Sample method) H hmap() (itpseq.Sample method) hmap_grid() (itpseq.Sample method) hmap_pos() (itpseq.Sample method) I infos() (itpseq.DataSet method) (itpseq.Sample method) itoeprint() (itpseq.DataSet method) (itpseq.Sample method) itp_len_plot() (itpseq.DataSet method) (itpseq.Sample method) itp_schematic() (in module itpseq.utils) itpseq module K kwargs (in module itpseq) L load_data() (itpseq.Replicate method) logo() (itpseq.Replicate method) (itpseq.Sample method) M module itpseq P parse() (in module itpseq.parsing) pos (itpseq.DataSet attribute) R rename() (itpseq.Replicate method) (itpseq.Sample method) reorder_samples() (itpseq.DataSet method) report() (itpseq.DataSet method) S set_references() (itpseq.DataSet method) subset_logo() (itpseq.Sample method) V volcano() (itpseq.Sample method)